ArchDB is a compilation of structural classifications of loops extracted from known protein structures. The structural classification is based on the geometry and conformation of the loop. The geometry is defined by four internal variables and the type of regular flanking secondary structures, resulting in 10 different loop types. Loops in ArchDB have been classified using an improved version (Espadaler et al.) of the original ArchType program published in 1997 by Oliva et al.

Prefix
archdb
Keywords
classification life science protein
Links
Homepage
Contact
Narcis Fernandez-Fuentes   0000-0002-6421-1080
Pattern for Local Unique Identifiers
Missing LUI pattern
Example Local Unique Identifier
39421   Resolve
Example CURIE
archdb:39421
Publications
Reviewer
Charles Tapley Hoyt   0000-0003-4423-4370   cthoyt
Metaregistry ArchDB

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for this resource with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.tp9z4q
Integbio Integbio logo integbio nbdc01795
Prefix Commons Prefix Commons logo prefixcommons archdb
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 39421 is used to demonstrate the providers available for ArchDB. A guide for curating additional providers can be found here.

Name Metaprefix URI
ArchDB archdb http://sbi.imim.es/cgi-bin/archdb//loops.pl?loop=39421
Bioregistry bioregistry https://bioregistry.io/archdb:39421
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/archdb:39421